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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015890435.1_cds_XP_016445142.1_40128
CDS Infomation

[gene=LOC107770352] [db_xref=GeneID:107770352] [protein=E3 ubiquitin protein ligase RIN2-like] [protein_id=XP_016445142.1] [location=join(29180..29419,31097..31174,33868..33954,34041..34162,37289..37385,37512..37617,38281..38438,38561..38698,38814..38881,38978..39208,43927..44290,45323..45379)] [gbkey=CDS]
Sequence

ATGGGCGTAAGCTACTTGTCAATTTCAGCACTCTGCACTGCTCTGAGCTATGTTGGACTC
CAGTGTTGGATGGGAATTTCAGTTCAGAAACTAAAATCAGATGGGCTCATTGGGGAGAGC
ATTATCAACTTTGGGAATGAAAGCCGTGCATTAGAGACTCTTTTAGGTTCACAGACCACA
ATTGCTTTGGGAGCCAATTTGGCAGTTAACGTATTTATCCTACTGGTTTTGTGTCTTAAG
ACAATATTCTTTGGAGATTTGCACTCACCAGAAATACGAAAGCTGGTTGAGCGCCTCATC
AATTATGTTATTTCCAAGGGAACTTTTCTTCCATTGGTAGTTCCACCAACGCTGTATCAG
GCAGGCCTATGGTCAACGTGGCTCGTTGTTCTTTGCTTTTTAAAGATGTTTCAAGCTTTA
GCTAGGGATCGACTTGAACGACTGAATGCCTCTCCTTCAGCTACTCCCTGGACATACTTC
CGTGTGTATTCTGCCTTATTGCTGGTTTTCTCTGCCAACTTACTCTGGATGAGGGTGTGC
CTGGTTGTATATAGAACAATAAGTTCATCCTTGTTTTTGTTATTGTTCTTTGAGCCTCTT
AGCATTGCATTTGAGACGCTTCAGGCTATTCTTGTTCATGGATTCCAGTTGCTCGACATA
TATATCCATGACTCGGCAAATGATATTTCAAATAGCCGAATATCCAAGCTCTTTGACATA
TCTGCTGCAGGCTCATTTGGGGAATGGAAAGGCATTCTTATTCGGAATATGGGTTTTCTC
CTAGACATGATGACTCTGTTGATGGCTCTCGCTCATTATGTGCACATTTGGTGGCTCCAT
GGCATGGCATTTCATCTAGTGGATGCAGTTCTTTTCCTAAATATCCGTGCTTTATTGAGT
GCTATTGTAAAACGTGTCAAAGGGTTCATTAAACTGAGAATAGCATTGGGCACTCTTCAT
GGTGCACTTCCTGATGCAACTTTGGAAGAGCTACAGACTTATGATGATGAATGCGCTATT
TGTAGGGAACCAATGGCAAAGGCGAAAAAGCTATCTTGTAATCATCTTTTCCATCTTTCA
TGCTTGAGATCTTGGTTAGATCAAGGCTTAACTGAAAATTATTCATGTCCCACTTGCCGG
AAGCCGTTGTTTATAGGCAGAAGCGAGAATGAGGTAAATCCTCATACTGCAGATGTTCGG
GGTGACGAGCTGCTTGCTCGTGAGATGAGTATGGGGCTTGATCGGTTGAATCTTCCTGGT
CATGCACTTCCAAATGAAGTTTCCCGCAATCAAACGCACAACCCTCTTGAAAGCAGTGAT
TGGAGGGGTTCGGGAATTGATTCAGGTTGGTTGGGCTTAGATGATGCTGGACCATCTACA
GGCATCAGATCAGGGGGACTGGGTAGAGTTCAGACAGTGATGAGGCATCTCGCAGCTGTT
GGAGAAACATACGCACAAACTGCTCTAGAAGATGCTGCCTGGAACCTTTGGTCTATGCGT
GCCTCTCAAGCTGGTACTTCCAGTTCAGCAATCCCTCCCGCAGGTAATGTGAGGCATGTC
GGAGGTGCTGGAGGGTTGCACTTGAGGACACCCTCACGTGCCACAAACAACAATGTATCC
AACATATATACAATGGTTGAAACTGTTAGAGAAGTGCTGCCACACATACCTGATGAAATT
ATTCTTGAGGATTTACAACGAACTCACTCAGTGACTGTTACTGTGAATAATCTTCTGCAC
ATGTGA

Peptide Sequence

PEP ID

XP_016445142.1
PEP Infomation

PREDICTED: E3 ubiquitin protein ligase RIN2-like [Nicotiana tabacum]
Sequence

MGVSYLSISALCTALSYVGLQCWMGISVQKLKSDGLIGESIINFGNESRALETLLGSQTT
IALGANLAVNVFILLVLCLKTIFFGDLHSPEIRKLVERLINYVISKGTFLPLVVPPTLYQ
AGLWSTWLVVLCFLKMFQALARDRLERLNASPSATPWTYFRVYSALLLVFSANLLWMRVC
LVVYRTISSSLFLLLFFEPLSIAFETLQAILVHGFQLLDIYIHDSANDISNSRISKLFDI
SAAGSFGEWKGILIRNMGFLLDMMTLLMALAHYVHIWWLHGMAFHLVDAVLFLNIRALLS
AIVKRVKGFIKLRIALGTLHGALPDATLEELQTYDDECAICREPMAKAKKLSCNHLFHLS
CLRSWLDQGLTENYSCPTCRKPLFIGRSENEVNPHTADVRGDELLAREMSMGLDRLNLPG
HALPNEVSRNQTHNPLESSDWRGSGIDSGWLGLDDAGPSTGIRSGGLGRVQTVMRHLAAV
GETYAQTALEDAAWNLWSMRASQAGTSSSAIPPAGNVRHVGGAGGLHLRTPSRATNNNVS
NIYTMVETVREVLPHIPDEIILEDLQRTHSVTVTVNNLLHM

Transcript Sequence

Gene sequence data has not been registered.